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SRX21194113: WGS of Harbour porpoise
1 ILLUMINA (Illumina NovaSeq 6000) run: 156.5M spots, 43.6G bases, 13.6Gb downloads

Design: We extracted total genomic DNA from skin or muscle tissue using one of the three following methods: NucleoSpin Tissue Kit, DNeasy Blood & Tissue Kit, or Phenol-Chloroform extraction. DNA concentration and quality were measured using a Qubit Fluorometer and Fragment Analyzer to ensure that chosen samples were not fragmented and at least 300ng of DNA per sample were available. Library and whole-genome resequencing was performed at GENEWIZ from Azenta Life Sciences in Leipzig, Germany, on a NovaSeq 6000 platform with a S4 flow cell and using 150-bp paired-end reads
Submitted by: Potsdam University
Study: Whole genome sequencing reads of North Atlantic Harbour Porpoises
show Abstracthide Abstract
Here, we used genomic approaches to study the population structure, genetic diversity, evolutionary history and local adaptation of North Atlantic Harbour porpoises (Phocoena phocoena). Our results shed light on the expansion of harbour porpoise populations across the North Atlantic, demonstrate that genome-wide data can unravel subtle population structure and contribute to understand how marine species adapt to their local environment. The results have great conservation implications as we found major levels of inbreeding and low genetic diversity in the endangered Black Sea subspecies and identified the critically endangered Proper Baltic Sea porpoises as a separate population.
Sample:
SAMN36664786 • SRS18453104 • All experiments • All runs
Library:
Name: No-5
Instrument: Illumina NovaSeq 6000
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 156.5M spots, 43.6G bases, 13.6Gb
Run# of Spots# of BasesSizePublished
SRR25461259156,549,60743.6G13.6Gb2023-09-06

ID:
28630142

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